Last updated: 2022-01-30

Checks: 2 0

Knit directory: beer_manuscript/

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Ignored files:
    Ignored:    .DS_Store
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    Ignored:    analysis/.DS_Store
    Ignored:    analysis/partials/.DS_Store
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    Ignored:    data_processed/simulation_2beads_mom/.DS_Store
    Ignored:    data_processed/simulation_2beads_truth/.DS_Store
    Ignored:    data_processed/simulation_4beads_edgeR/.DS_Store
    Ignored:    data_processed/simulation_curves.rda
    Ignored:    data_raw/.DS_Store
    Ignored:    figures/.DS_Store

Untracked files:
    Untracked:  R/figure_postpred.R
    Untracked:  R/run_hiv_custom.R
    Untracked:  data_processed/hiv_samples.rds
    Untracked:  figures/postpred.png

Unstaged changes:
    Modified:   R/figure_attnconstant.R
    Modified:   R/figure_corstructure.R
    Modified:   R/figure_simulation_postprob.R
    Modified:   README.Rmd

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File Version Author Date Message
Rmd c46876e Athena Chen 2022-01-30 added Figure S13, moved figure
html bbf7cba Athena Chen 2022-01-23 rebuilt webpage
html 3b06e48 Athena Chen 2022-01-23 Build site.
Rmd 924ae62 Athena Chen 2022-01-23 wflow_publish("./analysis/*")
html d8b023f Athena Chen 2022-01-18 Build site.
Rmd 0f0f767 Athena Chen 2022-01-18 Updated CS plots and hyperlinks for hiv_discussion
html 75f2a6d Athena Chen 2022-01-18 Build site.
Rmd 9d7b43a Athena Chen 2022-01-18 Updated repo to use most up-to-date figures and code
html 9245fe2 Athena Chen 2021-09-15 Build site.
Rmd 917bca7 Athena Chen 2021-09-15 wflow_publish(list.files("analysis", pattern = "Rmd", full.names = TRUE))
html 54af830 Athena Chen 2021-09-15 Build site.
Rmd 26ee6f3 Athena Chen 2021-09-15 wflow_publish(list.files("analysis", pattern = ".Rmd", full.names = TRUE))
html e30784b Athena Chen 2021-09-14 Build site.
html 4984369 Athena Chen 2021-09-14 Build site.
Rmd 06e8f65 Athena Chen 2021-09-14 wflow_publish(files = list.files("analysis/", pattern = ".Rmd",
html 34893c7 Athena Chen 2021-09-14 Build site.
Rmd 667d1af Athena Chen 2021-09-14 Added simulation output
html 667d1af Athena Chen 2021-09-14 Added simulation output
Rmd 2af2df7 Athena Chen 2021-09-07 Added html page to put BEER icon in webpage header
html 2af2df7 Athena Chen 2021-09-07 Added html page to put BEER icon in webpage header
html 9c2fc36 Athena Chen 2021-09-07 added workflowr page
Rmd 8d391f4 Athena Chen 2021-09-07 Start workflowr project.

This webpage details all analyses and methods used to produce the work presented in Detecting Antibody Reactivities in Phage ImmunoPrecipitation Sequencing Data. Though all figures and tables can be found on this site, scripts to generate the manuscript figures and tables and this website can also be found in the source code (also linked in the top right).

Mapping of manuscript contents to site pages

BEER